Off the top of my head, I can't think of a single time where I used those fel-pro paper gaskets and they properly lined up with all the ports on any heads. Generally, when you line up one pair of ports, the ones at the other end of the head are too far from the first pair.
When those are the gaskets that will be getting used, I cut the gasket and take a little slice out of it so I can line up each pair of ports individually.