Just got some super good news from Jesel. They created instructions for this kit and posted them on their webpage. The instructions show the proper machining operations for various installed valve heights. Basically, the longer the valves are then the closer you need to move your rocker shaft to the intake side of the head.

Here is a link to the Jesel instruction page. The kit of the Indy head is INS-07238 in the middle of the page. Maybe someone knows how to link directly to a pdf document?

http://www.jeselonline.com/index.php?categoryid=49