Hello Larry, the way I do it is like this: clean all window channels of all old sealer, wiper channels down with oil and grease remover, install gasket and glass. Then once the glass is in, and before you install the lock strip, take your glazing compound put the tip of the applicator in the area between the gasket and the body and go around the perimeter. Once that is done do the same thing only this time between the gasket and glass outside.
Make sure you tape off everything and wear rubber gloves as this stuff is MESSY!!
Once the sealer is there you clean off the excess and install the lock strip and reveal mouldings.
Good luck and if you have any questions let me know.