The Mopar engine factorys painted the motors after they where assembled, is what I have been told. It looks like that is good information on all the origianl motors I have taken apart back when
I have done it that way as well as painting each piece and then again when the motor is fully assembled, I do clean the mating surface like the water pump and oil pump gasket surfaces after painting
Mask them off to start with and clean them up with laquer thinner before assembling the gaskets and pumps together
Respray after fully assembled to make them look "stock"