You have to tweek it a bit.
I used a big 2 x 4 to give it a little persuasion.
I installed a new trunk weatherstrip, and it made the lid sit up a little high (1/16") too. Had some basement brinks sitting on it for over a month, no change.
Shaved the rubber bumppers down a little too, to see if it would help....not much.
Mine now sits about 1/32" high...best I could get.