A relay is the way to go. You need a 4 or 5-pin automotive relay (aka Bosch relay). 30 amp.
Wiring is like this :
- terminal 85 : to "ignition on" signal. Draws little current. Small wire.
- terminal 86 : To the ground. Small wire.
- terminal 87 : To the load (positive terminal). Same gauge wire as the fan pigtail, or larger.
- terminal 87a : unused
- terminal 30 : To battery, through a fuse (I'd say 30 Amp for 2 fans).
Negative terminal on the fan pigtail goes to the ground.
You can either use a relay for each fan, or one for both (in that case, get a second relay and keep it in the car, or even bolt it next to the first one. That way, if the first relay dies, you just swap the pigtail to the spare.
When you get the relay, get a pigtail with it, it's easier than having separate spade terminals...
To see the terminal positions, check this page out :
http://www.arnnworx.com/lighting.htm