I've figured out the big cardboard piece. I wonder why they used cardboard instead of molding closings into the box? Bizarre.
The old blower gasket looks fine, so I'm leaving it.
The parts list say the two solid foam pieces are for the "floor heat/defrost door," which must be the door I have pictured with them. The parts list doesn't show the foam piece with the hole cut out. I'm still not sure what's going on here. I ended up putting the piece with the hole on the inside of the floor heat/defrost door, that has the big piece sticking out, and a solid piece of foam on the other side (before I found my instructions, which had been conveniently misplaced for this step). The solid foam pieces look like they are much too wide for the hole they're supposed to cover. They're supposed to be a little too wide to make a good seal, but it looks like they are far far too wide.
Here's another piece I'm not sure about, the "Driver's side fresh air vent to cowl seal-"
Maybe it will make more sense later. Right now I can't think of any spot where it looks like this would go, other than around the blower motor. The name implies it goes elsewhere and it also doesn't fit in any spot around the blower motor, although it looks like it would. So I'm at a loss.
It looks like a better fit in these pics than it actually is. I'm sure this is wrong.