Finally got up to the shop and looked at another '67 Belvedere II.
Picture #1: Molding removed, the doors do have a horizontal slot that is countersunk.
Picture #2: Molding installed.
Picture #3: The stock screw holes are countersunk..
Picture #4: The molding has a ~1/8"-5/32" ledge between the door card slot and the molding attachment surface
Bottom line, both the door and moldings are countersunk at the screw locations. But I still maintain that with the "ledge", one could drill new holes for the screws, cone the door holes and get an acceptable job. If it was my car and I was going together for the last time, I'd even consider pop-riveting the moldings. But each to their own.