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The car is now running fine except now sometimes when I try to start it, it turns over and over with out firing up until I release the key to the run position. It was doing this before and I discovered a poor connection at the ballast resistor. It did not do this again until recently when I replaced the module.

5 pin ECU/4 terminal (dual) ballast or 4 pin ECU/2 terminal (single) ballast? I'd check for a loose/poor connection in the ign2 "crank" side from the key out to the ballast/coil and to the ECU (2 pins should be hot on a 5 pin ECU in crank). You can pull the yellow "ign" wire off of the starter relay to disable the starter during your tests to eliminate the noise distraction/running the batt down.

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