All you need to do is pull the fork out, rotate the throw out bearing 180 degrees, and slide the fork back in. The clips on the throw out bearing should hold to fork to it.

The fingers should center on the throw out bearing, I'm guessing your fork just needs to slide into the pivot bracket further and will work out once you have the clips set up right. If not you may have the wrong bracket. They are specific to the bellhousing that you're using.